HEC-DSA, Université de Lausanne

Gaussian Processes

 in Machine Learning

Viacheslav Borovitskiy (Slava)

Gaussian Processes

Definition. A Gaussian process is random function $f : X \times \Omega \to \R$ such that for any $x_1,..,x_n$, the vector $f(x_1),..,f(x_n)$ is multivariate Gaussian.

The distribution of a Gaussian process is characterized by

  • a mean function $m(x) = \E(f(x))$,
  • a kernel (covariance) function $k(x, x') = \Cov(f(x), f(x'))$,

Notation: $f \~ \f{GP}(m, k)$.

The kernel $k$ must be positive (semi-)definite, i.e. for all $x_1, .., x_n \in X$
the matrix $K_{\v{x} \v{x}} := \cbr{k(x_i, x_j)}_{\substack{1 \leq i \leq n \\ 1 \leq j \leq n}}$ must be positive (semi-)definite.

Gaussian Process Regression


  • a prior Gaussian Process $\f{GP}(m, k)$
  • and data $(x_1, y_1), .., (x_n, y_n) \in X \x \R$,

giving the posterior (conditional) Gaussian process $\f{GP}(\hat{m}, \hat{k})$.

The functions $\hat{m}$ and $\hat{k}$ may be explicitly expressed in terms of $m$ and $k$.

An Application: Bayesian Optimization

Goal: minimize unknown function $\phi$ in as few evaluations as possible.

  1. Build GP posterior $f \given \v{y}$ using data $(x_1,\phi(x_1)),..,(x_n,\phi(x_n))$.
  2. Choose $$ \htmlClass{fragment}{ x_{n+1} = \argmax_{x\in\c{X}} \underbrace{\alpha_{f\given\v{y}}(x).}_{\text{acquisition function}} } $$ For instance, expected improvement $$ \alpha_{f\given\v{y}}(x) = \E_{f\given\v{y}} \max(0, {\displaystyle\min_{i=1,..,n}} \phi(x_i) - f(x)). $$

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Bayesian Optimization



  • geostatistics,
  • robotics,
  • more...


Prior Gaussian Processes

Matérn Gaussian Processes

$$ \htmlData{class=fragment fade-out,fragment-index=9}{ \footnotesize \mathclap{ k_{\nu, \kappa, \sigma^2}(x,x') = \sigma^2 \frac{2^{1-\nu}}{\Gamma(\nu)} \del{\sqrt{2\nu} \frac{\norm{x-x'}}{\kappa}}^\nu K_\nu \del{\sqrt{2\nu} \frac{\norm{x-x'}}{\kappa}} } } \htmlData{class=fragment d-print-none,fragment-index=9}{ \footnotesize \mathclap{ k_{\infty, \kappa, \sigma^2}(x,x') = \sigma^2 \exp\del{-\frac{\norm{x-x'}^2}{2\kappa^2}} } } $$ $\sigma^2$: variance $\kappa$: length scale $\nu$: smoothness
$\nu\to\infty$: Gaussian kernel (RBF)

$\nu = 1/2$

$\nu = 3/2$

$\nu = 5/2$

$\nu = \infty$

Gaussian Processes on
Non-Euclidean Domains

Non-Euclidean Domains



How should Matérn kernels generalize to this setting?


$$ k_{\infty, \kappa, \sigma^2}^{(d_g)}(x,x') = \sigma^2\exp\del{-\frac{d_g(x,x')^2}{2\kappa^2}} $$

Theorem. (Feragen et al.) Let $M$ be a complete Riemannian manifold without boundary. If $k_{\infty, \kappa, \sigma^2}^{(d_g)}$ is positive semi-definite for all $\kappa$, then $M$ is isometric to a Euclidean space.

Need a different candidate generalization

Feragen et al. (2015)

Stochastic Partial Differential Equations

$$ \htmlData{class=fragment,fragment-index=0}{ \underset{\t{Matérn}}{\undergroup{\del{\frac{2\nu}{\kappa^2} - \Delta}^{\frac{\nu}{2}+\frac{d}{4}} f = \c{W}}} } $$ $\Delta$: Laplacian $\c{W}$: Gaussian white noise

Generalizes well to the Riemannian setting

Whittle (1963)
Lindgren et al. (2011)

The generalization

$$ \htmlData{class=fragment,fragment-index=0}{ \del{\frac{2\nu}{\kappa^2} - \Delta}^{\frac{\nu}{2}+\frac{d}{4}} f = \c{W} } $$

Riemannian Manifolds Undirected Graphs
• $\Delta$ — Laplace–Beltrami, • $\Delta$ — graph Laplacian,
• $\c{W}$ — white noise controlled by the Riemannian volume, • $\c{W}$ — i.i.d. Gaussians,
• $\left( \frac{2 \nu}{\kappa^2} - \Delta \right)^{\frac{\nu}{2} + \frac{d}{4}}$ is defined via functional calculus

Reproducing Kernels of
Manifold Sobolev Spaces

Matérn Kernels on Riemannian Manifolds

Define $\underbrace{H^s(M)}_{\text{Sobolev space}} = \underbrace{(1-\Delta)^{-\frac{s}{2}}}_{\text{Bessel potential}} L^2(M)$

Then the solution of $$ \bigg(\frac{2\nu}{\kappa^2} - \Delta\bigg)^{\frac{\nu}{2}+\frac{d}{4}} f = \c{W} $$

At least the solution of $$ \bigg(1 - \Delta\bigg)^{\frac{\nu}{2}+\frac{d}{4}} f = \c{W} $$

May be regarded as the isonormal proces on $H^{\nu + d/2}$.
It has the reproducing kernel of $H^{\nu + d/2}$ as its kernel.

Solution for Compact Riemannian Manifolds

The solution is a Gaussian process with kernel $$ \htmlData{class=fragment}{ k_{\nu, \kappa, \sigma^2}(x,x') = \frac{\sigma^2}{C_\nu} \sum_{n=0}^\infty \del{\frac{2\nu}{\kappa^2} - \lambda_n}^{-\nu-\frac{d}{2}} f_n(x) f_n(x') } $$

$\lambda_n, f_n$: eigenvalues and eigenfunctions of the Laplace–Beltrami

Matérn Kernels: Compact Riemannian Manifolds

The solution is a Gaussian process with kernel $$ \htmlData{class=fragment}{ k_{\nu, \kappa, \sigma^2}(x,x') = \frac{\sigma^2}{C_\nu} \sum_{n=0}^\infty \del{\frac{2\nu}{\kappa^2} - \lambda_n}^{-\nu-\frac{d}{2}} f_n(x) f_n(x') } $$

$\lambda_n, f_n$: eigenvalues and eigenfunctions of the Laplace–Beltrami

Proof. 1. Show that the covariance function of the solution is the reproducing kernel of the Sobolev space $H^{\nu + d/2}$.

2. The reproducing kernel may be computed via the Fourier method (known).

Riemannian Matérn kernels: examples

$k_{1/2}(\htmlStyle{color:rgb(255, 19, 0)!important}{\bullet},\.)$

Matérn Kernels: Connection to Heat Kernels

Matérn Kernels: Finite Undirected Graphs

The solution is a Gaussian process with kernel $$ \htmlData{class=fragment}{ k_{\nu, \kappa, \sigma^2}(i, j) = \frac{\sigma^2}{C_{\nu}} \sum_{n=0}^{\abs{V}-1} \del{\frac{2\nu}{\kappa^2} + \mathbf{\lambda_n}}^{-\nu} \mathbf{f_n}(i)\mathbf{f_n}(j) } $$

$\lambda_n, \mathbf{f_n}$: eigenvalues and eigenvectors of the Laplacian matrix

Graph Matérn kernels: examples

$k_{5/2}(\htmlStyle{color:rgb(255, 19, 0)!important}{\circ},\.)$


We now can compute kernels on



Thus we can use Gaussian process regression on such spaces!


Further Applications

An Application: Modeling Dynamical Systems with Uncertainty

$$ \htmlData{fragment-index=0,class=fragment}{ x_0 } \qquad \htmlData{fragment-index=1,class=fragment}{ x_1 = x_0 + f(x_0)\Delta t } \qquad \htmlData{fragment-index=2,class=fragment}{ x_2 = x_1 + f(x_1)\Delta t } \qquad \htmlData{fragment-index=3,class=fragment}{ .. } $$

Borovitskiy et al. (2020, NeurIPS)

Pendulum Dynamics: GP on a cylinder

(a) Ground truth

(b) Gaussian process

Borovitskiy et al. (2020, NeurIPS)

Model-based Reinforcement Learning

Video from Deisenroth and Rasmussen (2011)

Bayesian Optimization in Robotics

Joint postures: $\mathbb{T}^d$

Rotations: $\mathbb{S}^3$, $\operatorname{SO}(3)$

Manipulability: $\operatorname{SPD(3)}$

Jaquier et al. (CoRL 2021)

Traffic Speed Extrapolation on a Road Network

(a) Prediction

(b) Standard Deviation

Borovitskiy et al. (2021, AISTATS)

Wind Speed Modeling: Vector Fields on Manifolds

Hutchinson et al. (2021, NeurIPS)

InfoBAX: Shortest Paths for an Unknown Graph

Neiswanger et al. (2021, ICML)

Wind Speed Modeling: Vector Fields on Manifolds

A naive Euclidean model

Wind speed extrapolation on a map

The corresponding model on a globe

Wind Speed Modeling: Vector Fields on Manifolds

A geometry-aware model

Wind speed extrapolation on a map

The corresponding model on a globe

Hutchinson et al. (2021,To appear in NeurIPS)


Gaussian Processes and
Reproducing Kernel Hilbert Spaces (RKHS)

Posterior Moments in Terms of the RKHS

Interpolation: $f \given f(\v{x}) = \v{y}$

$\hat{m} = \argmin\limits_{f \in \c{H}_k} \norm{f}_{\c{H}_k}$ subject to $f(x_i) = y_i$

$(\hat{m}(x) - f_{\text{true}}(x))^2 \leq \norm{f_{\text{true}}}_{\c{H}_k}^2 \hat{k}(x, x)$

Regression: $f \given f(\v{x}) + \v{\varepsilon} = \v{y}~~$ where $~~\v{\varepsilon} \sim \f{N}(0, \sigma_n^2 I)$

$\hat{m} = \argmin\limits_{f \in \c{H}_k} \sum\limits_{i=1}^n (f(x_i) - y_i)^2 + \sigma_n^2 \norm{f}_{\c{H}_k}$

$(\hat{m}(x) - f_{\text{true}}(x))^2 \leq \norm{f_{\text{true}}}_{\c{H}_{k^{\sigma}}}^2 \! \del{\hat{k}(x, x) \!+\! \sigma_n^2}$
Here $\c{H}_{k^{\sigma}} = \c{H}_{k} + \c{H}_{\sigma_n^2 \delta}$ and $x \not= x_i, i = 1, \ldots, n$

Posterior Moments in Terms of the RKHS: Summary

Moments $\hat{m}(x)$ and $\hat{k}(x, x)$ of the posterior Gaussian process
may be expressed in terms of the RKHS $\c{H}_k$.

Samples and the RKHS

Consider a covariance $k$ living on a compact space $\c{X}$ with a finite measure $\nu$.

A generalized Driscol’s Zero-One Law. Consider $f \sim \f{GP}(0, k)$ and $r$ such that $\c{H}_k \subseteq \c{H}_r$. Let $I_{k r}: \c{H}_k \to \c{H}_r$ be the natural inclusion operator.

  • If $I_{k r}$ is Hilbert-Schmidt, then $f \in \c{H}_r$ with probability $1$.
  • Otherwise, $f \in \c{H}_r$ with probability $0$.

Thus $f \in \c{H}_k$ with probability $0$, however...

For any $0 < \theta < 1$ we have with probability $1$: $f \in (\c{H}_k, L^2(\c{X}, \nu))_{\theta, 2}$.

Error Decay

The reference







Marc Peter








Yee Why

Thank you!

Thank you!

viacheslav.borovitskiy@gmail.com                       https://vab.im


Own works:

V. Borovitskiy, A. Terenin, P. Mostowsky, M. P. Deisenroth. Matérn Gaussian Processes on Riemannian Manifolds.
In Neural Information Processing Systems (NeurIPS) 2020.

V. Borovitskiy, I. Azangulov, A. Terenin, P. Mostowsky, M. P. Deisenroth. Matérn Gaussian Processes on Graphs.
In International Conference on Artificial Intelligence and Statistics (AISTATS) 2021.

M. Hutchinson, A. Terenin, V. Borovitskiy, S. Takao, Y. W. Teh, M. P. Deisenroth. Vector-valued Gaussian Processes on Riemannian Manifolds via Gauge-Independent Projected Kernels. To appear in NeurIPS 2021.

Other works:

M. Kanagawa, P. Hennig, D. Sejdinovic, B. K. Sriperumbudur. Gaussian Processes and Kernel Methods: A Review on Connections and Equivalences. arXiv preprint arXiv:1807.02582, 2018.

I. Steinwart. Convergence Types and Rates in Generic Karhunen-Loeve Expansions with Applications to Sample Path Properties. Potential Analysis, 2018.

F. Lindgren, H. Rue, J. Lindström. An explicit link between Gaussian fields and Gaussian Markov random fields: the stochastic partial differential equation approach. Journal of the Royal Statistical Society: Series B, 2011.

A. Feragen, F. Lauze, S. Hauberg. Geodesic exponential kernels: When curvature and linearity conflict. Proceedings of the IEEE conference on computer vision and pattern recognition, 2015.

P. Whittle. On Stationary Processes in the Plane. Biometrika, 1954.

viacheslav.borovitskiy@gmail.com                       https://vab.im